ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACC miRNA* TGCTCACTCCTCTTTCTGTAACC mismatches: 4 bulges: 2 |
pre-miRNA
TCTCATGAGATTGACAGAAGAGAGTGAGCACCCGGCGTGATGGCCGGCCTAAAATCTATCCGGTCCTCGCCGGCTGCTCACTCCTCTTTCTGTAACCTTT
TTCTC
dot-bracket secondary structure
......((((...(((((((.(((((((((.((((((....((((((............)))).)).)))))).)))))))))...))))))).......
.))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTCATGAGATTGACAGAAGAGAGTGAGCACCCGGCGTGATGGCCGGCCTAAAATCTATCCGGTCCTCGCCGGCTGCTCACTCCTCTTTCTGTAACCTTT
TTCTC
dot-bracket secondary structure
......((((...(((((((.(((((((((.((((((....((((((............)))).)).)))))).)))))))))...))))))).......
.))))
SIMILARITIES| miRBase osa-MIR156d: 7e-36 PMRD osa-miR156d: 7e-36 microPC miR156: 0.000005 | UniProt no hits RFAM mir-156: 1e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
