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ABOUT THIS RECORD

ID: MNEST004674
species: Oryza sativa
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTTGTCTCAAGCTTGCTGCC

miRNA*
 TGACAAGCTTGTGGCAGCAAC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTG
CAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATC

dot-bracket secondary structure
..........(((((((((.((((.((((((((.(((((((((((((((.((((((((((((((.....((((.....))))........))))))))))
)))).))))))))))))))).)))))))).)))))))))))))..........


SIMILARITIES
miRBase osa-MIR444b: 2e-74

PMRD pvi-miR444: 5e-38

microPC miR444: 4e-60		UniProt sp|Q6EP49|MAD27_ORYSJ: 0.00001

RFAM MIR444: 1e-29		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST046210)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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