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ABOUT THIS RECORD
ID:
MNEST004675
species:
Oryza sativa
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCAGTTGTTGTCTCAAGCTT
miRNA*
GCTAGAGACAGCAACTGCATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CGAGCCGGCTTCTCAGTTGCTGCAAGTGGAGGCGGCAA
GCTAGAGACAGCAACTGCATA
TCTTGCAAGAAAATCGGTTTTATGGCCATACCGATGATTTT
CTTGCAAGCTG
TGCAGTTGTTGTCTCAAGCTT
GCTGCCTCCCTTTGCCAGAACTATTGGATATGAAA
dot-bracket secondary structure
.....((...(((.((((.(((((((.(((((((((((
(((.(((((((((((((((((
.(((((((((((((((......(((.....))).)))))))
)))))))).))
))))))))))))))).)))))
))))))))).)))).)))))))...)))..))...
SIMILARITIES
miRBase
osa-MIR444c
:
2e-74
PMRD
pvi-miR444
:
8e-43
microPC
miR444
:
2e-34
UniProt
sp|Q6EP49|MAD27_ORYSJ: 0.00005
RFAM
MIR444: 3e-67
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
Source sequences
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