ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGGGG mismatches: 3 bulges: 0 |
pre-miRNA
TAGCTAAAGAGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCT
AGCTTGATCTTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCC
CAAACAGAAGGGCTCCCATGCATATCG
dot-bracket secondary structure
..((......(((((((((((...((((.((((((((..((((((.((((((((((....................(((((((....(((((.(((((..
...(((((((((((((((.........)))).....))))))))))).....)))))))))).))))))).)))).)))))).))))))..)))))))).
))))..)))))))))))..))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TAGCTAAAGAGGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCT
AGCTTGATCTTTTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCC
CAAACAGAAGGGCTCCCATGCATATCG
dot-bracket secondary structure
..((......(((((((((((...((((.((((((((..((((((.((((((((((....................(((((((....(((((.(((((..
...(((((((((((((((.........)))).....))))))))))).....)))))))))).))))))).)))).)))))).))))))..)))))))).
))))..)))))))))))..))......
SIMILARITIES| miRBase osa-MIR166b: 1e-48 PMRD osa-miR166b: 1e-48 microPC miR166: 7e-38 | UniProt no hits RFAM mir-166: 1e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
