ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCT miRNA* CATGTGCCCGTCTTCTCCACC mismatches: 4 bulges: 0 |
pre-miRNA
AGAGAGAGAGGTAGACGGTGGCCGTGCACGGTGGAGAAGCAGGGCACGTGCTTCACCATCCACTCGCCTGCCGGCCGCCGGCCGCCATTGCCATGGATGG
TTCTTCATGTGCCCGTCTTCTCCACCGCAGCACCAACTGTCTCGATCGGCGTCT
dot-bracket secondary structure
.......((...(((((((....((((.(((((((((((..(((((((((....((((((((...((.((.(((((...))))).))..))..)))))))
)....)))))))))..)))))))))))..))))..)))))))...)).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
AGAGAGAGAGGTAGACGGTGGCCGTGCACGGTGGAGAAGCAGGGCACGTGCTTCACCATCCACTCGCCTGCCGGCCGCCGGCCGCCATTGCCATGGATGG
TTCTTCATGTGCCCGTCTTCTCCACCGCAGCACCAACTGTCTCGATCGGCGTCT
dot-bracket secondary structure
.......((...(((((((....((((.(((((((((((..(((((((((....((((((((...((.((.(((((...))))).))..))..)))))))
)....)))))))))..)))))))))))..))))..)))))))...)).......
SIMILARITIES| miRBase osa-MIR164b: 2e-49 PMRD osa-miR164b: 2e-49 microPC miR164: 0.000002 | UniProt no hits RFAM MIR164: 2e-49 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
