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ABOUT THIS RECORD

ID: MNEST004684
species: Oryza sativa
miRNA family: MIRf1561
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGCACGTGGTCTCCTTCTC

miRNA*
GAAGCAGGGCACGTGCATGC

mismatches: 2
bulges: 1

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pre-miRNA
GAGCTAGCTAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGT
GTGGGTTGGAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTTTGCCATAC


dot-bracket secondary structure
..(((....))).(((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).....
..)))..)))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))..........



SIMILARITIES
miRBase osa-MIR164a: 4e-85

PMRD osa-miR164a: 4e-85

microPC miR164: 0.00004
UniProt no hits

RFAM MIR164: 2e-75
most similar mature miRNAs

Identical with: osa-miRf11199-akr from PMRD (MNEST050414)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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