ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1561
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGCACGTGGTCTCCTTCTC miRNA* GAAGCAGGGCACGTGCATGC mismatches: 2 bulges: 1 |
pre-miRNA
GAGCTAGCTAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGT
GTGGGTTGGAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTTTGCCATAC
dot-bracket secondary structure
..(((....))).(((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).....
..)))..)))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGCTAGCTAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGT
GTGGGTTGGAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTTTGCCATAC
dot-bracket secondary structure
..(((....))).(((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).....
..)))..)))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))..........
SIMILARITIES| miRBase osa-MIR164a: 4e-85 PMRD osa-miR164a: 4e-85 microPC miR164: 0.00004 | UniProt no hits RFAM MIR164: 2e-75 | most similar mature miRNAs |
Identical with: osa-miRf11199-akr from PMRD (MNEST050414) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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