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ABOUT THIS RECORD

ID: MNEST004685
species: Oryza sativa
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CACGTGGTCTCCTTCTCCATC

mismatches: 2
bulges: 0

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pre-miRNA
TAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGTGTGGGTTG
GAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTT


dot-bracket secondary structure
....((((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).......)))..)
))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))).



SIMILARITIES
miRBase osa-MIR164a: 3e-85

PMRD osa-miR164a: 3e-85

microPC miR164: 0.00003
UniProt no hits

RFAM MIR164: 1e-75
most similar mature miRNAs

Identical with: osa-miRf11199-akr from PMRD (MNEST050414)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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