ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGGTCTCCTTCTCCATC mismatches: 2 bulges: 0 |
pre-miRNA
TAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGTGTGGGTTG
GAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTT
dot-bracket secondary structure
....((((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).......)))..)
))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGTGTGGGTTG
GAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTT
dot-bracket secondary structure
....((((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).......)))..)
))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))).
SIMILARITIES| miRBase osa-MIR164a: 3e-85 PMRD osa-miR164a: 3e-85 microPC miR164: 0.00003 | UniProt no hits RFAM MIR164: 1e-75 | most similar mature miRNAs |
Identical with: osa-miRf11199-akr from PMRD (MNEST050414) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
