miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004698
species: Oryza sativa
miRNA family: MIR446
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCAATATGAATGTGGGAAA

miRNA*
 TTTCACATTTATATTGATGTT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TACCATAGATCCGTTGGCTTATCTGATTACATGATGATGATTACTCCCTCCGTTTCACAAATATAAGTCATTTTAGCATTTTTCACATTTATATTGATGT
TATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGATCATTAACATCAATATGAATGTGGAAAATGCT
AGAATGACTTACACTG

dot-bracket secondary structure
.....(((.((..(((((((.((((....((((.(((((.(((.....((((((((((((...(((((((((((((((((((((((((((((((((((((
((.............)))))))))))))))))))))))))))))))))))))))..))))))))))))....)))))))).))))....)))).)).)))
))...)).))).....


SIMILARITIES
miRBase osa-MIR809d: 2e-32

PMRD osa-miR809d: 2e-32

microPC miR809: 0.00000000000001		UniProt no hits

RFAM MIR1122: 5e-42		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;