miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004698
species: Oryza sativa
miRNA family: MIR446
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATCAATATGAATGTGGGAAA

miRNA*
TTTCACATTTATATTGATGTT

mismatches: 0
bulges: 0

View larger
pre-miRNA
TACCATAGATCCGTTGGCTTATCTGATTACATGATGATGATTACTCCCTCCGTTTCACAAATATAAGTCATTTTAGCATTTTTCACATTTATATTGATGT
T
ATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGATCATTAACATCAATATGAATGTGGAAAATGCT
AGAATGACTTACACTG


dot-bracket secondary structure
.....(((.((..(((((((.((((....((((.(((((.(((.....((((((((((((...(((((((((((((((((((((((((((((((((((((
(
(.............)))))))))))))))))))))))))))))))))))))))..))))))))))))....)))))))).))))....)))).)).)))
))...)).))).....



SIMILARITIES
miRBase osa-MIR809d: 2e-32

PMRD osa-miR809d: 2e-32

microPC miR809: 0.00000000000001
UniProt no hits

RFAM MIR1122: 5e-42
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;