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ABOUT THIS RECORD
ID:
MNEST004700
species:
Oryza sativa
miRNA family:
MIR446
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CATCAATATGAATGTGGGAAA
miRNA*
TTCCACATGTCTAGATTCATTAA
mismatches:
4
bulges:
2
View larger
pre-miRNA
ATTATAAGTATGTACTACTCTCTCCGTTCACAATGTAAGTCATTTTAGCATT
TTCCACATGTCTAGATTCATTAA
CATCAATATGAATGTGGGAAA
TGCT
AGAATGACTTACATTGTGAAACAGAGGAAGTAGTACCTACTACAA
dot-bracket secondary structure
......((((.((((((((.((((..((((((((((((((((((((((((((
((((((((.((...(((.((...
.)).)))..))))))))))))
))))
))))))))))))))))))))...)))).)))))))).))))....
SIMILARITIES
miRBase
osa-MIR809d
:
2e-31
PMRD
osa-miR809d
:
2e-31
microPC
miR809
:
0.000000000000008
UniProt
no hits
RFAM
MIR1122: 5e-35
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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