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ABOUT THIS RECORD

ID: MNEST004703
species: Oryza sativa
miRNA family: MIR446
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCAATATGAATGTGGGAAA

miRNA*
 TTCCACATTCATATTAATACT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GAAATTCTTCCTCCGTTTCACAATGTAAGTCATTTTAGTATTTTCCACATTCATATTAATACTAATGAATCTAGATAGATATATATGTCTAGATTCATTA
GCATCAATATAAATCTAGGAAATGCTAGAATAACTTACATTGTGAAACGGAGGGAGTAAATCTAGATTCATTAGCATCAATATGAATGTGGGAAATGCTA
AAATGACTTATATTGTGAAACGAAGGGAGTAACA

dot-bracket secondary structure
......((((((.((((((((((((((((((((((((((((((((((((((((((((.((.((((((((((((((((((((....)))))..((((..((
(((((..((......)).))..))))))))).((((...((((...))))...))))..))))))))))))))).)).))))))))))))))))))))))
)))))))))))))))))))))).)))))).....


SIMILARITIES
miRBase osa-MIR441c: 1e-51

PMRD osa-miR441c: 1e-51

microPC miR809: 4e-27		UniProt no hits

RFAM MIR1122: 1e-52		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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