ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR446
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATCTGGGAAA miRNA* TTCCACATTCATATTAATACT mismatches: 3 bulges: 0 |
pre-miRNA
AACGTTTCACTCATTTTAGTATTTTCCACATTCATATTAATACTAATGAATCTATATATATATATATGTCTAGATTTATTAGCATCAATATGAATCTGGG
AAATGCTAGAATAACTTACATTG
dot-bracket secondary structure
............((((((((((((((((.(((((((((.((.((((((((((((.(((((....))))).)))))))))))).)).))))))))).))))
))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACGTTTCACTCATTTTAGTATTTTCCACATTCATATTAATACTAATGAATCTATATATATATATATGTCTAGATTTATTAGCATCAATATGAATCTGGG
AAATGCTAGAATAACTTACATTG
dot-bracket secondary structure
............((((((((((((((((.(((((((((.((.((((((((((((.(((((....))))).)))))))))))).)).))))))))).))))
))))))))))))...........
SIMILARITIES| miRBase osa-MIR446: 2e-18 PMRD osa-miR446: 2e-18 microPC miR809: 0.000000002 | UniProt no hits RFAM MIR1122: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
