miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004712
species: Oryza sativa
miRNA family: MIR1884
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGACGCCGTTGACTTTTTT

miRNA*
 AAAAGTCAACGGCATACATA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 TAAAAAATATTATACTCCCTCCGTCCCTAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCATCTTATTGAAAACTTTTGTGAAACATA
TAAAACTATATGTATACATAAAAGTATATTTAACAATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAAATTTTTAATAAGACGAACGGTCAAA
TATATTTAAAAAAGTCAACGGCATACATATTTAGGGATGGAGGGAGTATGATTAAAACA

dot-bracket secondary structure
........((((((((((((((((((((((((((.((..((((((((((((((((((.((((((((((((((.(((((((((..(((((((((..(((((
((....)))))))...)))))))))..(((((....))))).((((..((((.((...........)).))))..))))))))))))).)))))))))))
))).)))))))))))))))))).)).)))))))))))))))))))))))))).......


SIMILARITIES
miRBase osa-MIR806h: 3e-56

PMRD oru-miR806: 6e-82

microPC miR806: 3e-43		UniProt no hits

RFAM MIR806: 4e-77		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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