miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004720
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGGCTTAATAGATTCGTCT

miRNA*
 TCAAATTTTTTGAGTTTAATT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TCAAATATTTAGACACATGTATATAGCATTAAATGTGGACGAGTAAAAAAACCAATTACACAGTTTGCATGTAAATTGCGAGTCAAATTTTTTGAGTTTA
ATTACGTCATGATTTGACAATATGGTGCTACAGTAAACATTTGCTAATGACAGATTAATTAGGCTTAATAGATTCGTCTNTTAGCTTACAGGCGGAATCT
GTAATTTATTTTGTTATTAATCTATATTTAATACTTTAAATATGTGTCCGTATACTTT

dot-bracket secondary structure
...........(((((((((.((.((.((((((((((((..(((((.((((..(((((((...(((((.(((((.(((..((...(((((.(((((((((
((((.(((((.......(((.(((.(((....)))..))))))...)))))....))))))))))))).)))))...))..))).))))).)))))...)
))))))..)))).)))))..)))))))))))).)).)).)))))))))..........


SIMILARITIES
miRBase osa-MIR2124c: 6e-54

PMRD osa-miR442: 5e-36

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




Liczniki na strone;