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ABOUT THIS RECORD
ID:
MNEST004744
species:
Oryza sativa
miRNA family:
MIR1120
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTACCTCCGTCCCAAAATAT
miRNA*
ATTTTGAGACGGAGGGAGTAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TATGCAATGCT
ACTACCTCCGTCCCAAAATAT
AACCACTTTTAGCTACGAATCTGGACACGGTTGTCTAGATTCATAGCTAAAAATGCTTAC
ATTTTGAG
ACGGAGGGAGTAT
ATAGTAGT
dot-bracket secondary structure
..(((.(((.(
(((.((((((((.((((((.(
((.((.(((((((((.(((((((((((....))))))))))).))))))))).)).))).
)))))).)
))))))).)))))
)).)))..
SIMILARITIES
miRBase
osa-MIR1439
:
0.000000000006
PMRD
osa-miR1439
:
0.000000000006
microPC
miR1439
:
0.00009
UniProt
no hits
RFAM
MIR1122: 1e-56
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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