miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004754
species: Oryza sativa
miRNA family: MIR1120
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTCCCTCCGTCCCATAATAT

miRNA*
 ATTTCGGGACGTAGGGAGTAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATGATAGTAATTCCTACTCCCTCCGTCCCATAATATAAAGGATTTTAAGTTTTTGCCTACAACATTTGACCACTCGTCTTATTCAAAAAATTTTAAAATT
ATTAATTATTTTATTTGTGACTTACTTTATTATCTACAGTATTTTAAGCACAACTTTCCGTTTTTTGTATTTACAAAAAAAATTTGAATAGGACGAGTGA
TCAAATGTTGCAAGCAAAAATTGAAAATCCCTTATATTTCGGGACGTAGGGAGTATGTTGCAGATAAC

dot-bracket secondary structure
......(((((...((((((((.((((((..(((((((.(((((((.(((((((((...((((((((((.(((((((((((((((((((((.((((....
.))))..)))))..(((((.((((...((((......))))...))))))))).......((((((((....))))))))...)))))))))))))))).
))))))))))...))))))))).))))))).)))))))..)))))).)))))))).))))).......


SIMILARITIES
miRBase osa-MIR818e: 0.00000000006

PMRD osa-miRf11523-akr: 0.00000000006

microPC miR818: 0.00000001		UniProt no hits

RFAM MIR806: 2e-17		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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