ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR819
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGGTTATAAGACTTTCTAA miRNA* AAAAAGTCTTATAATATGAAA mismatches: 4 bulges: 0 |
pre-miRNA
GCACACGATCTACTATACTTTTGATACGTACTACCTCCGTTCCAGGTTATAAGACTTTCTAATATTATCCACATTCATATATATGTTAATGAATCTAGGC
ATATATATGTGGGTAATGCTAAAAAGTCTTATAATATGAAACGGATGAAGTATTTGCGAGGTTGTAAATTTAGCTCTAG
dot-bracket secondary structure
......(((.(((...(((((...((.(((((...((((((.((.(((((((((((((.((.(((((((((((....((((((((((..........)))
)))))))))))))))))).)).))))))))))))).)).))))))...))))).)).))))).))).))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCACACGATCTACTATACTTTTGATACGTACTACCTCCGTTCCAGGTTATAAGACTTTCTAATATTATCCACATTCATATATATGTTAATGAATCTAGGC
ATATATATGTGGGTAATGCTAAAAAGTCTTATAATATGAAACGGATGAAGTATTTGCGAGGTTGTAAATTTAGCTCTAG
dot-bracket secondary structure
......(((.(((...(((((...((.(((((...((((((.((.(((((((((((((.((.(((((((((((....((((((((((..........)))
)))))))))))))))))).)).))))))))))))).)).))))))...))))).)).))))).))).))).........
SIMILARITIES| miRBase osa-MIR819h: 3e-27 PMRD osa-miR819h: 3e-27 microPC miR819: 6e-16 | UniProt no hits RFAM MIR1122: 9e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
