ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATTCGTAGTACTAGGATN miRNA* TTATAGTACAACGAATGTGGA mismatches: 4 bulges: 0 |
pre-miRNA
TATGGTGTACTCCCTCCGTCCGAAAAGTGAATCTAGCCTCTGTATGTGACACATTATAGTACAACGAATGTGGATAGAAATATGTGTAGATTCGTAGTAC
TAGGATNTGTCGCATCGAGTNTTGGTTTTTTATGGGACGGAGGGAGTGGTAATTGCT
dot-bracket secondary structure
.......((((((((((((((.....(((((.((((.(((...((((((((.(((.((((((.((((((.((.(((......))).)).)))))).))))
)).))).)))))))).)))..))))...))))).)))))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TATGGTGTACTCCCTCCGTCCGAAAAGTGAATCTAGCCTCTGTATGTGACACATTATAGTACAACGAATGTGGATAGAAATATGTGTAGATTCGTAGTAC
TAGGATNTGTCGCATCGAGTNTTGGTTTTTTATGGGACGGAGGGAGTGGTAATTGCT
dot-bracket secondary structure
.......((((((((((((((.....(((((.((((.(((...((((((((.(((.((((((.((((((.((.(((......))).)).)))))).))))
)).))).)))))))).)))..))))...))))).)))))))))))))).........
SIMILARITIES| miRBase no hits PMRD osa-miRf10842-akr: 0.0000001 microPC miR1128: 1e-72 | UniProt no hits RFAM MIR1122: 7e-19 | most similar mature miRNAs |
Identical with: miR1128 from microPC (MNEST044936) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
