miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004773
species: Oryza sativa
miRNA family: MIRf162
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCAACGTTTGACTATCCGTCT

miRNA*
 ACAGGACGGTTAAACGATGGAC

mismatches: 2
bulges: 1
View larger
pre-miRNA
 CTCCATCAAAAAAAAAAAAGACAAACCCTATGTTTTTGTGGCCAACGTTTGACTATCCGTCTTATATGAAATTTTTTTATAATTAGTATTTTCATTGCTG
TTAGATGATAAAACATAATTAATACTTTATGCGTGACTTATCTTTTTAAATTTTTTCACAAATTTTTCAAATAAGACAGGACGGTTAAACGATGGACACG
GAAACTAGGGTTTTTTTTTTTTTTG

dot-bracket secondary structure
...........((((((((((.((((((((.(((((((((.(((.(((((((((.((((((((((.(((((..((..(((((..((((((...((((.((
((.........)))))))).))))))))))).((((...................)))).))..))))).))))))).))).))))))))).))).))))
))))))))))))).)))))))))).


SIMILARITIES
miRBase osa-MIR812o: 0.00000000000005

PMRD osa-miRf11361-akr: 1e-30

microPC miR812: 9e-19		UniProt no hits

RFAM MIR812: 2e-32		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;