ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1850
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTTAGTTCACATCAATCTT miRNA* GTTGTGTGTGAACTAAACGTGG mismatches: 1 bulges: 2 |
pre-miRNA
TACCATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCT
TCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAACTC
dot-bracket secondary structure
.......(((((((...((((.((((((((((((((((.(((((((((((((.((((((((((((((.((.......)).))))))))))))))))).))
)))))))).)))))))))))))))).))))...)))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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TACCATGATGTGATGGAGATGCGATGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCT
TCCTCCAAATTCCCAACTTTTCATCACATCACAATCACATAAACTC
dot-bracket secondary structure
.......(((((((...((((.((((((((((((((((.(((((((((((((.((((((((((((((.((.......)).))))))))))))))))).))
)))))))).)))))))))))))))).))))...)))))))......
SIMILARITIES| miRBase osa-MIR1850: 2e-71 PMRD no hits microPC miR1850: 3e-51 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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