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ABOUT THIS RECORD
ID:
MNEST004781
species:
Oryza sativa
miRNA family:
MIR2504
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGACAAAGTTTATAGAAAAA
miRNA*
TTTTTACAAACTTAATCAAAC
mismatches:
4
bulges:
0
View larger
pre-miRNA
GAAAAGAGATACTCTCTTCGTTTCAGGTCATGAGACGTTTTGATTTTGATTAAAGTCAAATTACTTTAAAT
ATGACAAAGTTTATAGAAAAA
TATAATAA
TATTTATAATACGAAATTAGTTTTATTAAATCAATAATTGAATATATTTTCACAATAAATTTGTTTTGAGTTAAAAATATTATTATTT
TTTTTACAAACT
TAATCAAAC
TTGAAGCAGTTTGATTTTGACCAAAGTCAACACGTTAGCTGAAACGGAGGGAGTACACGCTGATATTG
dot-bracket secondary structure
.........(((((((((((((((((.......(((((.(((((((((.(((((((((((((.((((((..
.(((..((((((.((((((((
.(((((((
(((((.((((.((((((.(((((((((.....))))..((((......))))....))))).)))))).)))).))))))))))))))
)))))).)))))
)..)))...
)))))).))))))))))))).))))))))).)))))..))))))))))))))))).............
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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