ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1428
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGATAATGCCGTGAATTTG miRNA* AATTCGCATGCCCTATCTTGTG mismatches: 3 bulges: 1 |
pre-miRNA
CAATATGTTAGTGCGCTTGGCGAATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATA
ATGCCGTGAATTTGCTAAGCGTTCAAACCCACT
dot-bracket secondary structure
......(((...(((((((((((((((((..((..((((((((.(((....(((.((((.............))))....))).....))).))))))))
..)).)))))))))))))))))...))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAATATGTTAGTGCGCTTGGCGAATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATA
ATGCCGTGAATTTGCTAAGCGTTCAAACCCACT
dot-bracket secondary structure
......(((...(((((((((((((((((..((..((((((((.(((....(((.((((.............))))....))).....))).))))))))
..)).)))))))))))))))))...))).....
SIMILARITIES| miRBase osa-MIR1428c: 6e-37 PMRD osa-miR1428c: 6e-37 microPC miR1428: 3e-48 | UniProt no hits RFAM MIR1428: 6e-65 | most similar mature miRNAs |
Identical with: miR1428 from microPC (MNEST045332) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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