ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2863
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGTTTATTTGGACTAGAGT miRNA* ACTAGTTCAACTAAATGAACT mismatches: 2 bulges: 0 |
pre-miRNA
GTGGGCTGACCCGTGGATACTCTTTTACCCACACTAGTTCAACTAAATGAACTAAATTTCACTTTTAGAATCACAAAAAATGAAATGTAGTTCGTTTATT
TGGACTAGAGTGGGTCAATTAGTACCTATGGGTTGGCCCG
dot-bracket secondary structure
..((((((((((((((.((((..((.((((((.(((((((((.(((((((((((.((((((.((((.........)))).)))))).))))))))))).)
)))))))).)))))).))..)))).)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GTGGGCTGACCCGTGGATACTCTTTTACCCACACTAGTTCAACTAAATGAACTAAATTTCACTTTTAGAATCACAAAAAATGAAATGTAGTTCGTTTATT
TGGACTAGAGTGGGTCAATTAGTACCTATGGGTTGGCCCG
dot-bracket secondary structure
..((((((((((((((.((((..((.((((((.(((((((((.(((((((((((.((((((.((((.........)))).)))))).))))))))))).)
)))))))).)))))).))..)))).)))))))))))))).
SIMILARITIES| miRBase osa-MIR2863b: 2e-52 PMRD osa-miR2863b: 2e-52 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: osa-MIR2863b from miRBase (MNEST042384) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
