ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAAACTTTCTAGCATTGCCC miRNA* GCAATGTTAGAAATTCTTATA mismatches: 4 bulges: 0 |
pre-miRNA
AGTTCTACTTCCTCCGTTTTATAATGTAAAACTTTCTAGCATTGCCCACGTTCATTTATATGTTAATGAATCTAGATATATGTATGTGTTTAAATTCATT
AACATCTATATGTATATGAGCAATGTTAGAAATTCTTATATTATGAAACGGAGGGAGTAGCTA
dot-bracket secondary structure
....(((((((((((((((((((((((((...(((((((((((((.((.((.(((.((.((((((((((((.((((((((....)))))))).)))))))
))))).)).))).)).)).)))))))))))))...)))))))))))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTTCTACTTCCTCCGTTTTATAATGTAAAACTTTCTAGCATTGCCCACGTTCATTTATATGTTAATGAATCTAGATATATGTATGTGTTTAAATTCATT
AACATCTATATGTATATGAGCAATGTTAGAAATTCTTATATTATGAAACGGAGGGAGTAGCTA
dot-bracket secondary structure
....(((((((((((((((((((((((((...(((((((((((((.((.((.(((.((.((((((((((((.((((((((....)))))))).)))))))
))))).)).))).)).)).)))))))))))))...)))))))))))))))))))))))))...
SIMILARITIES| miRBase osa-MIR819j: 7e-34 PMRD osa-miR819j: 7e-34 microPC miR1120: 2e-74 | UniProt no hits RFAM MIR1122: 7e-50 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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