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ABOUT THIS RECORD
ID:
MNEST004906
species:
Oryza sativa
miRNA family:
MIRf529
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTGGATGTGACACATCCTAT
miRNA*
AGAATATGTCACATCCAGTCC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GTGAGACTTACTCCCTCCGTTCCATAAAAAACCAACCTAGT
ACTGGATGTGACACATCCTAT
TACAACGAATCTGGACATACATCTGTCCAGATTTGTTA
TACT
AGAATATGTCACATCCAGTCC
TAGATTCACTTTTTTTGGGACGGAGGGAGTATCTTTTA
dot-bracket secondary structure
..((((..((((((((((((((((.(((((...((.((((.
(((((((((((((.((.(((.
((.((((((((((((((......)))))))))))))).
)).)
)).)).))))))))))))).)
))).))...))))).))))))))))))))))))))...
SIMILARITIES
miRBase
osa-MIR1442
:
0.000000000000009
PMRD
osa-miRf11738-akr
:
9e-18
microPC
miR816
:
0.0000000001
UniProt
no hits
RFAM
MIR1122: 1e-45
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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