ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATTCGTTGTACTAGAATAT miRNA* ATCTTAGTATTACAAATCTGG mismatches: 3 bulges: 0 |
pre-miRNA
CATCCTAGTACTGAATGTGACATATCTTAGTATTACAAATCTGGATATACACCTGTCCAGATTCGTTGTACTAGAATATGTCACATCCAGTCTTAGTTT
dot-bracket secondary structure
....((((.((((.(((((((((((.(((((((.((.((((((((((......)))))))))).)).))))))).))))))))))).)))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATCCTAGTACTGAATGTGACATATCTTAGTATTACAAATCTGGATATACACCTGTCCAGATTCGTTGTACTAGAATATGTCACATCCAGTCTTAGTTT
dot-bracket secondary structure
....((((.((((.(((((((((((.(((((((.((.((((((((((......)))))))))).)).))))))).))))))))))).)))).))))...
SIMILARITIES| miRBase osa-MIR816: 0.000005 PMRD osa-miRf11780-akr: 0.00000002 microPC miR816: 7e-33 | UniProt no hits RFAM MIR1122: 3e-20 | most similar mature miRNAs |
Identical with: miR816 from microPC (MNEST046674) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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