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ABOUT THIS RECORD
ID:
MNEST004909
species:
Oryza sativa
miRNA family:
MIRf528
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATTCGTTGTACTATGATAT
miRNA*
ATCCTAATACAACAATCTGG
mismatches:
3
bulges:
1
View larger
pre-miRNA
TAGTGGCTGTCTCTTACTCCCTCCGTCGTCAAATATAAGGTTATTTGGCAGGATGTGGCAC
ATCCTAATACAACAATCTGG
GTAGAGAGTCTATCC
AGAT
TCGTTGTACTATGATAT
GTCACATCCTGGCAAAAGCCCTTAATATGATGGACGGATGGTGTAAGGATTTAGCCTC
dot-bracket secondary structure
....(((((..((((((.((.((((((((((.((.(((((...((((.((((((((((((.
(((.((.(((((((((((((
(((((...)))))))
))))
).)))))).)).))).)
))))))))))).))))...))))))).)))).)))))).)).))))))...)))))..
SIMILARITIES
miRBase
osa-MIR814c
:
0.000002
PMRD
osa-miR814c
:
0.000002
microPC
miR1436
:
0.00000004
UniProt
no hits
RFAM
MIR1122: 0.0000000000007
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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