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ABOUT THIS RECORD
ID:
MNEST004910
species:
Oryza sativa
miRNA family:
MIRf528
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGATTCGTTGTATTAGGAAA
miRNA*
CCCTAGTATAACGAATCTAGG
mismatches:
2
bulges:
0
View larger
pre-miRNA
CAAGTACTCCCTCCATCCCATAAAAAACCAACCTGGTATTGGAGGTGATATT
CCCTAGTATAACGAATCTAGG
CAACCTTCTGTT
CAGATTCGTTGTATT
AGGAAA
TATCACCTCCAATAGTAGGTTGATTTTTTGTGGGACGAAGGGAGTAATT
dot-bracket secondary structure
....((((((((...((((((((((((.(((((((.((((((((((((((((
.(((((((((((((((((.((
((......))))
.))))))))))))))
))).))
)))))))))))))).))))))).))))))))))))...))))))))...
SIMILARITIES
miRBase
osa-MIR1442
:
0.0005
PMRD
osa-miRf10830-akr
:
0.000000008
microPC
miR1436
:
0.000008
UniProt
no hits
RFAM
MIR1122: 2e-83
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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