ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR821
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTCATCAACAACAAAGTTG miRNA* ACTTTTGTTTTGGTCATTTTG mismatches: 1 bulges: 2 |
pre-miRNA
TTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAATATCTACAACTTTTGTTTTGGTCATTTTGCTATATGG
dot-bracket secondary structure
.((....)).(((((.(((((.((((((((((((...............)))))).))))))))))).))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAATATCTACAACTTTTGTTTTGGTCATTTTGCTATATGG
dot-bracket secondary structure
.((....)).(((((.(((((.((((((((((((...............)))))).))))))))))).))))).........
SIMILARITIES| miRBase osa-MIR821c: 2e-20 PMRD osa-miR821c: 2e-20 microPC no hits | UniProt no hits RFAM MIR821: 4e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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