ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGACTTTATAGCATTGTCC miRNA* GTAATGCTAGAAAGTCTTATG mismatches: 1 bulges: 0 |
pre-miRNA
ATTTCAGGCTATAAGACTTTATAGCATTGTCCACATTCATATAGATGCTAATGAATCTAGGCACATATATGTTTAGATTCATATATGAATATGGGTAATG
CTAGAAAGTCTTATGATATGAAA
dot-bracket secondary structure
.(((((...(((((((((((.((((((((((((.(((((((((........((((((((((((......))))))))))))))))))))).)))))))))
))).)))))))))))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTCAGGCTATAAGACTTTATAGCATTGTCCACATTCATATAGATGCTAATGAATCTAGGCACATATATGTTTAGATTCATATATGAATATGGGTAATG
CTAGAAAGTCTTATGATATGAAA
dot-bracket secondary structure
.(((((...(((((((((((.((((((((((((.(((((((((........((((((((((((......))))))))))))))))))))).)))))))))
))).)))))))))))...)))))
SIMILARITIES| miRBase osa-MIR819e: 5e-28 PMRD osa-miR819e: 5e-28 microPC miR819: 2e-21 | UniProt no hits RFAM MIR1122: 1e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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