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ABOUT THIS RECORD
ID:
MNEST004918
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGTAATGCTAGAAAGTCTT
miRNA*
GACTTTATAGCATTGTCCACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATTACTACCTCCATTTCAATTTCAGGCTATAA
GACTTTATAGCATTGTCCACA
TTCATATAGATGCTAATGAATCTAGGCACATATATGTTTAGATTCAT
ATATGAATA
TGGGTAATGCTAGAAAGTCTT
ATGATATGAAATGGAGGAAGTATCTTTTG
dot-bracket secondary structure
..((((.(((((((((((...(((.....(((
((((((.((((((((((((.(
((((((((........((((((((((((......)))))))))))))
)))))))).
)))))))))))).))))))))
))))..))))))))))).)))).......
SIMILARITIES
miRBase
osa-MIR819e
:
4e-32
PMRD
osa-miR819e
:
4e-32
microPC
miR819
:
2e-21
UniProt
no hits
RFAM
MIR1122: 2e-19
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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