ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1946a
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCGGGCAGTGGTGGCACAC miRNA* GCGCCACCACCACCCCGCTTG mismatches: 4 bulges: 0 |
pre-miRNA
AGGTAATAGGAGCCGGGCAGTGGTGGCACACACCTTCAATCCCAGCACTTGNGAGGCAGAGGCAGGCGGATTTCTGAGTGCTAGAATTAAAGGCGTGCGC
CACCACCACCCCGCTTGCAGCTA
dot-bracket secondary structure
.........((((.(((..((((((((.(((.((((.(((...((((((((.((.((........))...))..))))))))...))).)))).))).))
))))))..))).)))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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AGGTAATAGGAGCCGGGCAGTGGTGGCACACACCTTCAATCCCAGCACTTGNGAGGCAGAGGCAGGCGGATTTCTGAGTGCTAGAATTAAAGGCGTGCGC
CACCACCACCCCGCTTGCAGCTA
dot-bracket secondary structure
.........((((.(((..((((((((.(((.((((.(((...((((((((.((.((........))...))..))))))))...))).)))).))).))
))))))..))).)))).......
SIMILARITIES| miRBase mmu-mir-1946a: 2e-18 PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
