ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1940
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGAGGACTGAGAAGGTGGA miRNA* CATTGGTTAAGACCTCCAACA mismatches: 5 bulges: 0 |
pre-miRNA
GGAGCCAGGATGCAGCCTGCTATGGAGGACTGAGAAGGTGGAGCAGTTCTGTACCGTGCTGCCTTCCATTGGTTAAGACCTCCAACAGTAAAGGGCTGCC
CGGCC
dot-bracket secondary structure
...(((.((..((((((((((.((((((.((.((..(((((((((((..........)))))..))))))..)).)).))))))..)))...))))))))
)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGAGCCAGGATGCAGCCTGCTATGGAGGACTGAGAAGGTGGAGCAGTTCTGTACCGTGCTGCCTTCCATTGGTTAAGACCTCCAACAGTAAAGGGCTGCC
CGGCC
dot-bracket secondary structure
...(((.((..((((((((((.((((((.((.((..(((((((((((..........)))))..))))))..)).)).))))))..)))...))))))))
)))).
SIMILARITIES| miRBase mmu-mir-1940: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM SNORA47: 3e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
