ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-10a
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGATTCGATTCTAGGGGAAT miRNA* ACCCTGTAGAACCGAATTTGTG mismatches: 2 bulges: 1 |
pre-miRNA
GGACCCGAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGA
TGCAAAAACTTCATATA
dot-bracket secondary structure
......((((((....(((((.((((((((.((((.(((((.((((((((((..((....)).....)))))))))).))))))))).)))))))).)))
))....)))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGACCCGAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGA
TGCAAAAACTTCATATA
dot-bracket secondary structure
......((((((....(((((.((((((((.((((.(((((.((((((((((..((....)).....)))))))))).))))))))).)))))))).)))
))....)))))).....
SIMILARITIES| miRBase rno-mir-10b: 3e-54 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 6e-31 | most similar mature miRNAs |
Identical with: mmu-mir-10b from miRBase (MNEST031774) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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