ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1949
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTATACCAGGATGTCAGCATA miRNA* GGTTGGCATTCTGGGCCTGGTT mismatches: 5 bulges: 1 |
pre-miRNA
CAGCCAATAGCTGGTTGGCATTCTGGGCCTGGTTCATGCCACCTCTGTTGTTAACTATACCAGGATGTCAGCATAGTTGCTTAC
dot-bracket secondary structure
((((.....))))(((((((((((((...(((((.(((.((....)).))).)))))..)))))))))))))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGCCAATAGCTGGTTGGCATTCTGGGCCTGGTTCATGCCACCTCTGTTGTTAACTATACCAGGATGTCAGCATAGTTGCTTAC
dot-bracket secondary structure
((((.....))))(((((((((((((...(((((.(((.((....)).))).)))))..)))))))))))))............
SIMILARITIES| miRBase rno-mir-1949: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM SNORA74: 6e-30 | most similar mature miRNAs |
Identical with: mmu-mir-1949 from miRBase (MNEST032453) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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