ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-154
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATCATACACGGTTGACCTAT miRNA* AGGTTATCCGTGTTGCCTTCG mismatches: 5 bulges: 0 |
pre-miRNA
TGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGT
dot-bracket secondary structure
.(((.((((((((((((.((((((....((((..(((....)))))))....)))))).)))))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGT
dot-bracket secondary structure
.(((.((((((((((((.((((((....((((..(((....)))))))....)))))).)))))))))))).)))
SIMILARITIES| miRBase rno-mir-154: 3e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 5e-30 | most similar mature miRNAs |
Identical with: mmu-mir-154 from miRBase (MNEST031890) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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