ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-335
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAGAGCAATAACGAAAAAT miRNA* TTTTCATTATTGCTCCTGACC mismatches: 2 bulges: 0 |
pre-miRNA
TAACCGAGAAACAGATTGGAAAAGATTTCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTG
ACCCCCTCTCATGGGTTATAGCCAGTCGAGTAAGTATGCAT
dot-bracket secondary structure
)............((((((.....((..(((.((((.((((((((.(((((((((.((((((((((((.......)))).)))))))).))))))))).))
)))))).)))).)))..))..))))))..(((....)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAACCGAGAAACAGATTGGAAAAGATTTCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTG
ACCCCCTCTCATGGGTTATAGCCAGTCGAGTAAGTATGCAT
dot-bracket secondary structure
)............((((((.....((..(((.((((.((((((((.(((((((((.((((((((((((.......)))).)))))))).))))))))).))
)))))).)))).)))..))..))))))..(((....)))..
SIMILARITIES| miRBase mmu-mir-335: 1.0E-50 PMRD no hits microPC no hits | UniProt no hits RFAM 5mir-335: 6.0E-25 | most similar mature miRNAs |
Identical with: mmu-mir-335 from miRBase (MNEST032000) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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