ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-548
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGAACTTCAGTTGCTTTTA miRNA* ACAGCAACTGAAGTTCTAGAA mismatches: 4 bulges: 0 |
pre-miRNA
TGTTTCATTTTCTAGAACTTCAGTTGCTTTTACCATCTGACTTTTAAAAACTGATTACAGCAACTGAAGTTCTAGAAAATAGAAA
dot-bracket secondary structure
..((((((((((((((((((((((((((..............................)))))))))))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGTTTCATTTTCTAGAACTTCAGTTGCTTTTACCATCTGACTTTTAAAAACTGATTACAGCAACTGAAGTTCTAGAAAATAGAAA
dot-bracket secondary structure
..((((((((((((((((((((((((((..............................)))))))))))))))))))))).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
