ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: miR-145
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATTCCTGGAAATACTGTTC miRNA* TCCAGTTTTCCCAGGAATCCCT mismatches: 3 bulges: 1 |
pre-miRNA
CTCTCTCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTAGATGCTGAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTACCA
dot-bracket secondary structure
........((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).)))).)).))))).)).)).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTCTCACCTTGTCCTCACGGTCCAGTTTTCCCAGGAATCCCTTAGATGCTGAGATGGGGATTCCTGGAAATACTGTTCTTGAGGTCATGGCTTACCA
dot-bracket secondary structure
........((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).)))).)).))))).)).)).......
SIMILARITIES| miRBase ssc-mir-145: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-145: 3e-35 | most similar mature miRNAs |
Identical with: ssc-mir-145 from miRBase (MNEST033995) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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