ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: miR-365
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGGACTTTCAGGGGCAGCT miRNA* TGCCCCTAAAAATCCTTAT mismatches: 4 bulges: 1 |
pre-miRNA
CCGGAGGGTGTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTT
GCAGTGTTCATCGGGCAGCAG
dot-bracket secondary structure
........(((((((((((((((((((.((((((((..(((.(((((((..((((....(((...))).)))).))))))).))).)))))))).)))))
))..))))).)))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGAGGGTGTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTT
GCAGTGTTCATCGGGCAGCAG
dot-bracket secondary structure
........(((((((((((((((((((.((((((((..(((.(((((((..((((....(((...))).)))).))))))).))).)))))))).)))))
))..))))).)))))))....
SIMILARITIES| miRBase cfa-mir-365-2: 7e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-365: 4e-41 | most similar mature miRNAs |
Identical with: eca-mir-365 from miRBase (MNEST027146) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
