ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-196
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCCTGTTGTTGG miRNA* GACAGCACGACACTGCCTTCA mismatches: 3 bulges: 0 |
pre-miRNA
GCATCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCGT
dot-bracket secondary structure
...(((..(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCATCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCGT
dot-bracket secondary structure
...(((..(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))))))......
SIMILARITIES| miRBase mmu-mir-196b: 5e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 2e-39 | most similar mature miRNAs |
Identical with: ptr-mir-196b from miRBase (MNEST030273) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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