ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: miR-181b
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACTGAACAATGAATGCAA miRNA* ACATTCATTGCTGTCGGTGGGTT mismatches: 4 bulges: 2 |
pre-miRNA
CTTCTTAAAAGGTCACAATCAACATTCATTGCTGTCGGTGGGTTGAACTGTGTAGACAAGCTCACTGAACAATGAATGCAACTGTGGCCCCGCATTTTG
dot-bracket secondary structure
..........(((((((.....(((((((((...((((((((((..............)))))))))).)))))))))....)))))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTCTTAAAAGGTCACAATCAACATTCATTGCTGTCGGTGGGTTGAACTGTGTAGACAAGCTCACTGAACAATGAATGCAACTGTGGCCCCGCATTTTG
dot-bracket secondary structure
..........(((((((.....(((((((((...((((((((((..............)))))))))).)))))))))....)))))))..........
SIMILARITIES| miRBase mml-mir-181b-1: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-181: 0.00000000009 | most similar mature miRNAs |
Identical with: ssc-mir-181b-1 from miRBase (MNEST034008) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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