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ABOUT THIS RECORD

ID: MNEST005302
species: Sus scrofa
miRNA family: mir-22
source: miRNEST

Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTTCTTCAGTGGCAAGCTTT

miRNA*
AGCTGCCAGTTGAAGAACTGT

mismatches: 0
bulges: 2

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pre-miRNA
TGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCT

dot-bracket secondary structure
.(((..((((((((((((((((((((.((((((....(((...))).))))))))))).))))))))))))))).))).


SIMILARITIES
miRBase eca-mir-22: 1e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-22: 2e-38
most similar mature miRNAs

Identical with: mne-mir-22 from miRBase (MNEST028181)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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