ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: miR-664
source: miRNEST
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGCTGGGGAAAATGCTTGA miRNA* TCGCATTTTTCTTCCTATAT mismatches: 5 bulges: 1 |
pre-miRNA
GCACGAGGGTAGCATAATGTATAGTTCCATGTGTTTGTGCTTTTCGCATTTTTCTTCCTATATTTGACTTCTAGTTTCATACTGTTGTGGCTGGGGAAAA
TGCTTGACATAATTTCTAGTGTCTTAAATTTGTTAAGACTTGTTTTGTGACCTAGCATGTGATCTATTCTAGAGAATGTTTCATGTGCACTTGAAG
dot-bracket secondary structure
(((((((....(((((((.....)))..)))).))))))).....(((((((((((.(((((...((((...)))).........)))))..))))))))
)))....(((((........(((((((.....))))))).....))))).....((((((((..(((((....)))))..))))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCACGAGGGTAGCATAATGTATAGTTCCATGTGTTTGTGCTTTTCGCATTTTTCTTCCTATATTTGACTTCTAGTTTCATACTGTTGTGGCTGGGGAAAA
TGCTTGACATAATTTCTAGTGTCTTAAATTTGTTAAGACTTGTTTTGTGACCTAGCATGTGATCTATTCTAGAGAATGTTTCATGTGCACTTGAAG
dot-bracket secondary structure
(((((((....(((((((.....)))..)))).))))))).....(((((((((((.(((((...((((...)))).........)))))..))))))))
)))....(((((........(((((((.....))))))).....))))).....((((((((..(((((....)))))..))))))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P08548|LIN1_NYCCO: 0.0000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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