ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: miR-1790
source: miRNEST
SEQUENCE & STRUCTURE| miRNA TGGGTGAGGGCGGGGGGGGAG miRNA* AGCCCCCCGCCCGTCATCCGCA mismatches: 4 bulges: 1 |
pre-miRNA
GTCCTGCGCTAAAAGGCCACTTGGGTGAGGGCGGGGGGGGAGACTGCGTGAGAGTGAGCGGGGAAGGAAAAGTTCAGGAGGAAACCGCAAGGTTTTTTAT
TCTAGTCCGTGAGCGCAGCACCCCCGTCACCAGCCATCATGCCTAGAGCCTTCCTGGTGAAGCGAAGGAGCCCCCCGCCCGTCATCCGCAATTGGGACGA
ACTCCCGG
dot-bracket secondary structure
....((.(((....)))))..(((((((((((((((((.....((((((((..((((.(((((........(((((((((((((((....)))))))...
.....))).))))).......)))))))))......))))))..))..(((((((.....)).)))))..)))))))))).)))))))....(((((...
..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCCTGCGCTAAAAGGCCACTTGGGTGAGGGCGGGGGGGGAGACTGCGTGAGAGTGAGCGGGGAAGGAAAAGTTCAGGAGGAAACCGCAAGGTTTTTTAT
TCTAGTCCGTGAGCGCAGCACCCCCGTCACCAGCCATCATGCCTAGAGCCTTCCTGGTGAAGCGAAGGAGCCCCCCGCCCGTCATCCGCAATTGGGACGA
ACTCCCGG
dot-bracket secondary structure
....((.(((....)))))..(((((((((((((((((.....((((((((..((((.(((((........(((((((((((((((....)))))))...
.....))).))))).......)))))))))......))))))..))..(((((((.....)).)))))..)))))))))).)))))))....(((((...
..))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
