ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: miR-1
source: miRNEST
SEQUENCE & STRUCTURE| miRNA GTACATACTTCTTTATGTACC miRNA* ATGTAAAGAAGTATGTATTT mismatches: 2 bulges: 0 |
pre-miRNA
TTATATCTACCTGTTTGGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTATCAGGTACTGAAC
dot-bracket secondary structure
.......((((((...(((((((((((((((((((((..(((((..............))))).)))))))))))))))))))))...))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATATCTACCTGTTTGGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTATCAGGTACTGAAC
dot-bracket secondary structure
.......((((((...(((((((((((((((((((((..(((((..............))))).)))))))))))))))))))))...))))))......
SIMILARITIES| miRBase xtr-mir-1a-1: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 5e-37 | most similar mature miRNAs |
Identical with: cfa-mir-1-2 from miRBase (MNEST026614) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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