ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: mir-133
source: miRNEST
SEQUENCE & STRUCTURE| miRNA CAGCTGGTTGAAGGGGACCAA miRNA* GGTTCCATTTTACCAGCTTTA mismatches: 3 bulges: 0 |
pre-miRNA
GCCAACTTCCCCGTAGATATGTAGTCCTCAATGCAATCCTACAGCTGGTTGAAGGGGACCAAATCCATTGAAGAGGTGATTTGGTTCCATTTTACCAGCT
TTAGCAAAGCATTGCAGCGCACTAAGAATAGTTACAAGGAA
dot-bracket secondary structure
......((((..((((.(((.((((.((((((((....(((.(((((((.(((.(((((((((((.(((.....)))))))))))))).))).)))))))
.)))....)))))).))...))))...))).))))..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCAACTTCCCCGTAGATATGTAGTCCTCAATGCAATCCTACAGCTGGTTGAAGGGGACCAAATCCATTGAAGAGGTGATTTGGTTCCATTTTACCAGCT
TTAGCAAAGCATTGCAGCGCACTAAGAATAGTTACAAGGAA
dot-bracket secondary structure
......((((..((((.(((.((((.((((((((....(((.(((((((.(((.(((((((((((.(((.....)))))))))))))).))).)))))))
.)))....)))))).))...))))...))).))))..))))
SIMILARITIES| miRBase xtr-mir-133a: 2e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-28 | most similar mature miRNAs |
Identical with: xtr-mir-133a from miRBase (MNEST025776) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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