ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: let-7
source: miRNEST
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGTTTGTGCT miRNA* CGCAAGCTACTGCCTTGCT mismatches: 2 bulges: 0 |
pre-miRNA
TAATGCCAAGCTATGGTGTTCTGGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACACTGCCCGCTGTGGAGATAACTGCGCAAGCTAC
TGCCTTGCTAGTGCTGGGAATCTACTGCAGATGGAGA
dot-bracket secondary structure
.....(((.((..(((..(((((((.(((((.(((((((((((((((((.((((..(((((.((...)).))))).........)))).)))))))))))
))))))))))).)))))))..)))..))...)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATGCCAAGCTATGGTGTTCTGGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACACTGCCCGCTGTGGAGATAACTGCGCAAGCTAC
TGCCTTGCTAGTGCTGGGAATCTACTGCAGATGGAGA
dot-bracket secondary structure
.....(((.((..(((..(((((((.(((((.(((((((((((((((((.((((..(((((.((...)).))))).........)))).)))))))))))
))))))))))).)))))))..)))..))...)))...
SIMILARITIES| miRBase xtr-let-7i: 7e-43 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-32 | most similar mature miRNAs |
Identical with: xtr-let-7i from miRBase (MNEST025683) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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