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ABOUT THIS RECORD
ID:
MNEST005583
species:
Ciona intestinalis
miRNA family:
miR-4116
source:
miRNEST
Taxonomy by NCBI:
Ciona intestinalis
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGGGCAAGATGGGACATTTCT
miRNA*
CGATATCCCATCTTACCCCA
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATCTAAATGTATAGTAGGGTG
GGGGCAAGATGGGACATTTCT
CTGCCCATTTAATAGTAAACAAAGAAAGTTTAGAGAATGAGATAACCACATTCTTACG
ACTCCAAACAATCTTTCATATTGTTTAAAACACGATTAGAAAATATGGGATTTAGGTGCTAA
CGATATCCCATCTTACCCCA
CAGTACTTTTTAACGCAT
dot-bracket secondary structure
...((((.....((((..(((
(((..(((((((((.(((...
..((((.((((((..(((((((.((((((((.(((..(((((.........)))))..
.))).))))....))))...))))))).......))))))((((.....)))).)).))...
.))).))))))))).)))))
)..)))).))))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record