ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: miR-4142
source: miRNEST
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCGCTCATCTGGTATAAA miRNA* TATACCAGACGAGCTGCTATA mismatches: 2 bulges: 0 |
pre-miRNA
AAATAATCTTTTAGCCGCTCATCTGGTATAAAAAGAACGCCAGGGAATCATTCCCTTATTAAGTGTTGCCGGATGACAGACGGAACATCAGTAATACACT
ATGTTATTTATACCAGACGAGCTGCTATAAGTTAAAT
dot-bracket secondary structure
...(((.(((.((((.((((.(((((((((((...((((..((((((...))))))(((((.(((((.(((.........))))))))...)))))....
.)))).))))))))))).)))).)))).))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATAATCTTTTAGCCGCTCATCTGGTATAAAAAGAACGCCAGGGAATCATTCCCTTATTAAGTGTTGCCGGATGACAGACGGAACATCAGTAATACACT
ATGTTATTTATACCAGACGAGCTGCTATAAGTTAAAT
dot-bracket secondary structure
...(((.(((.((((.((((.(((((((((((...((((..((((((...))))))(((((.(((((.(((.........))))))))...)))))....
.)))).))))))))))).)))).)))).))))))...
SIMILARITIES| miRBase cin-mir-4142: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
