ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: miR-4179
source: miRNEST
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCTCATCTGGTCTAAAAAA miRNA* TTATATACCAGATAAGCCGGAA mismatches: 4 bulges: 1 |
pre-miRNA
TAATCTTTTTTCAGCTCATCTGGTCTAAAAAAGAAGAATTTTATTCTAATGTTTCGTCTGCCATTTGCAAGACTTTAAATTTTGGTAAAGCAGGTGAAAC
GTTAAAACAAAATTAACATGTTTTATATACCAGATAAGCCGGAAAAAATGTT
dot-bracket secondary structure
.(((.(((((((.(((.(((((((.((.((((....((((((.((.(((((((((((((((..(((((.(((........))).))))))))))))))))
)))).)).))))))......)))).)).))))))).)))..))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATCTTTTTTCAGCTCATCTGGTCTAAAAAAGAAGAATTTTATTCTAATGTTTCGTCTGCCATTTGCAAGACTTTAAATTTTGGTAAAGCAGGTGAAAC
GTTAAAACAAAATTAACATGTTTTATATACCAGATAAGCCGGAAAAAATGTT
dot-bracket secondary structure
.(((.(((((((.(((.(((((((.((.((((....((((((.((.(((((((((((((((..(((((.(((........))).))))))))))))))))
)))).)).))))))......)))).)).))))))).)))..))))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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